3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06258

Details:

PFam ID : PF06258

PFam Domain Description : Mitochondrial fission ELM1

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 150

Average sequence length: 289.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06258	C6RKB4_ACIRA_139_298	96.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06258	D5EGC4_AMICL_16_373	100

Sequence based PCA Plot of the family - PF06258 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=67 Length=8
Motif2 Start=2 Length=8
Motif3 Start=191 Length=8
Motif4 Start=240 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay