3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06253

Details:

PFam ID : PF06253

PFam Domain Description : Trimethylamine methyltransferase (MTTB)

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 267

Average sequence length: 459.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06253	D8EYJ6_9DELT_4_402	81.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06253	A4EW88_9RHOB_10_520	100

Sequence based PCA Plot of the family - PF06253 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=71 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay