3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06251

Details:

PFam ID : PF06251

PFam Domain Description : Capsule biosynthesis GfcC

Number of Sequence in 50% Dataset : 89

Number of Sequence in Full Dataset : 206

Average sequence length: 203.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06251	A3Y6F4_9GAMM_32_254	78.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06251	D0IAS9_VIBHO_36_277	100

Sequence based PCA Plot of the family - PF06251 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=54 Length=8
Motif2 Start=146 Length=8
Motif3 Start=134 Length=8
Motif4 Start=211 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay