3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06248

Details:

PFam ID : PF06248

PFam Domain Description : Centromere/kinetochore Zw10

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 135

Average sequence length: 394.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06248	C5XX17_SORBI_312_569	60.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06248	E9BY41_9EUKA_12_639	98.5

Sequence based PCA Plot of the family - PF06248 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=21 Length=8
Motif4 Start=253 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay