3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06240

Details:

PFam ID : PF06240

PFam Domain Description : Carbon monoxide dehydrogenase subunit G (CoxG)

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 366

Average sequence length: 139.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06240	C7NMU4_HALUD_5_146	78.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06240	D6M3V6_9ACTO_54_201	100

Sequence based PCA Plot of the family - PF06240 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=11 Length=8
Motif3 Start=21 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay