3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06238

Details:

PFam ID : PF06238

PFam Domain Description : Borrelia burgdorferi BBR25 lipoprotein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 15

Average sequence length: 78.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06238	B3S6Q7_TRIAD_351_453	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06238	C0RC22_9SPIO_5_120	92.8

Sequence based PCA Plot of the family - PF06238 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay