3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06233

Details:

PFam ID : PF06233

PFam Domain Description : Usg-like family

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 73

Average sequence length: 79.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06233	B9HTZ3_POPTR_23_169	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06233	Q2RY30_RHORT_18_98	100

Sequence based PCA Plot of the family - PF06233 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay