3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06229

Details:

PFam ID : PF06229

PFam Domain Description : FRG1-like family

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 96

Average sequence length: 169.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06229	D5ER18_CORAD_297_395	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06229	E3KZV7_PUCGT_121_344	100

Sequence based PCA Plot of the family - PF06229 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=18
Motif3 Start=158 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay