3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06227

Details:

PFam ID : PF06227

PFam Domain Description : dsDNA Poxvirus

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 80

Average sequence length: 153.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06227	Q9DHH4_YLDV_1_175	85.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06227	Q08F33_DPV84_1_183	98.7

Sequence based PCA Plot of the family - PF06227 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=135 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay