3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06220

Details:

PFam ID : PF06220

PFam Domain Description : U1 zinc finger

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 190

Average sequence length: 36.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06220	A2DZ43_TRIVA_12_46	63.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06220	Q4DYG0_TRYCR_46_80	97.8

Sequence based PCA Plot of the family - PF06220 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=3 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay