3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06218

Details:

PFam ID : PF06218

PFam Domain Description : Nitrogen permease regulator 2

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 156

Average sequence length: 300.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06218	Q6C343_YARLI_5_504	65.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06218	Q6C343_YARLI_5_504	100

Sequence based PCA Plot of the family - PF06218 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=75 Length=8
Motif2 Start=114 Length=8
Motif3 Start=50 Length=8
Motif4 Start=90 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay