3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06217

Details:

PFam ID : PF06217

PFam Domain Description : GAGA binding protein-like family

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 78

Average sequence length: 243.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06217	Q500V0_ARATH_2_108	64.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06217	B8LRA8_PICSI_1_334	92.2

Sequence based PCA Plot of the family - PF06217 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=242 Length=8
Motif4 Start=321 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay