3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06213

Details:

PFam ID : PF06213

PFam Domain Description : Cobalamin biosynthesis protein CobT

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 209

Average sequence length: 266.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06213	D3RWF9_ALLVD_3_301	80.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06213	D6JDK8_ECOLX_2_335	99.5

Sequence based PCA Plot of the family - PF06213 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=63 Length=8
Motif3 Start=47 Length=11
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay