3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06209

Details:

PFam ID : PF06209

PFam Domain Description : Cofactor of BRCA1 (COBRA1)

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 41

Average sequence length: 264.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06209	Q4T5U7_TETNG_183_219	51.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06209	A7T0W2_NEMVE_97_570	100

Sequence based PCA Plot of the family - PF06209 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay