3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06208

Details:

PFam ID : PF06208

PFam Domain Description : Borna disease virus G protein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 4

Average sequence length: 375.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06208	B8X6M2_9MONO_1_500	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06208	B8X6M2_9MONO_1_500	100

Sequence based PCA Plot of the family - PF06208 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=307 Length=8
Motif2 Start=467 Length=8
Motif3 Start=444 Length=8
Motif4 Start=118 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay