3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06206

Details:

PFam ID : PF06206

PFam Domain Description : CpeT/CpcT family (DUF1001)

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 133

Average sequence length: 160.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06206	B4VS30_9CYAN_1_91	71.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06206	B7G7Q1_PHATC_64_269	100

Sequence based PCA Plot of the family - PF06206 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=8
Motif2 Start=178 Length=8
Motif3 Start=60 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay