3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06205

Details:

PFam ID : PF06205

PFam Domain Description : Glycosyltransferase 36 associated family

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 417

Average sequence length: 89.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06205	C6D231_PAESJ_1456_1518	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06205	E7M4C7_9BACL_2155_2265	100

Sequence based PCA Plot of the family - PF06205 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=69 Length=8
Motif2 Start=1 Length=8
Motif3 Start=59 Length=8
Motif4 Start=24 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay