3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06203

Details:

PFam ID : PF06203

PFam Domain Description : CCT motif

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 260

Average sequence length: 43.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06203	F0W9T4_9STRA_412_457	12.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06203	E1EZN3_GIAIA_127_171	94.2

Sequence based PCA Plot of the family - PF06203 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=7 Length=8
Motif2 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay