3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06202

Details:

PFam ID : PF06202

PFam Domain Description : Amylo-alpha-1,6-glucosidase

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 562

Average sequence length: 365.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06202	D8UC23_VOLCA_1_78	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06202	E6TWS7_BACCJ_368_671	99.8

Sequence based PCA Plot of the family - PF06202 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=86 Length=8
Motif2 Start=152 Length=8
Motif3 Start=307 Length=8
Motif4 Start=368 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay