3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06193

Details:

PFam ID : PF06193

PFam Domain Description : Orthopoxvirus A5L protein-like

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 18

Average sequence length: 143.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06193	Q98274_MCV1_268_343	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06193	Q98274_MCV1_268_343	94.1

Sequence based PCA Plot of the family - PF06193 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay