3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06189

Details:

PFam ID : PF06189

PFam Domain Description : 5'-nucleotidase

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 148

Average sequence length: 249.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06189	A6GN12_9BURK_6_195	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06189	B9NRV4_9RHOB_46_311	99.3

Sequence based PCA Plot of the family - PF06189 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=193 Length=22
Motif2 Start=236 Length=8
Motif3 Start=122 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay