3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06188

Details:

PFam ID : PF06188

PFam Domain Description : HrpE/YscL/FliH and V-type ATPase subunit E

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 60

Average sequence length: 163.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06188	A6GN12_9BURK_6_195	32.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06188	E0SE50_DICD3_1_191	100

Sequence based PCA Plot of the family - PF06188 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay