3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06185

Details:

PFam ID : PF06185

PFam Domain Description : YecM protein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 117

Average sequence length: 180.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06185	Q6MH86_BDEBA_2_136	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06185	E1SQM9_FERBD_1_186	100

Sequence based PCA Plot of the family - PF06185 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=87 Length=8
Motif3 Start=170 Length=8
Motif4 Start=102 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay