3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06183

Details:

PFam ID : PF06183

PFam Domain Description : DinI-like family

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 139

Average sequence length: 60.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06183	A9MNG4_SALAR_1_32	11.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06183	B5N3A4_SALET_14_63	99.2

Sequence based PCA Plot of the family - PF06183 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=12 Length=30
Motif2 Start=54 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay