3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06182

Details:

PFam ID : PF06182

PFam Domain Description : ABC-2 family transporter protein

Number of Sequence in 50% Dataset : 253

Number of Sequence in Full Dataset : 588

Average sequence length: 222.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06182	D0KZ07_HALNC_1_300	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06182	D3AG08_9CLOT_33_191	100

Sequence based PCA Plot of the family - PF06182 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=62 Length=8
Motif4 Start=127 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay