3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06180

Details:

PFam ID : PF06180

PFam Domain Description : Cobalt chelatase (CbiK)

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 255

Average sequence length: 253.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06180	D5V0N6_ARCNC_11_268	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06180	D5ES07_PRER2_41_356	100

Sequence based PCA Plot of the family - PF06180 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=125 Length=8
Motif3 Start=79 Length=11
Motif4 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay