3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06178

Details:

PFam ID : PF06178

PFam Domain Description : Oligogalacturonate-specific porin protein (KdgM)

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 118

Average sequence length: 208.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06178	Q6D5A4_ERWCT_117_254	94.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06178	A3UR43_VIBSP_16_286	100

Sequence based PCA Plot of the family - PF06178 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=126 Length=8
Motif2 Start=101 Length=8
Motif3 Start=10 Length=8
Motif4 Start=178 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay