3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06177

Details:

PFam ID : PF06177

PFam Domain Description : QueT transporter

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 242

Average sequence length: 151.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06177	E1L6E5_9FIRM_1_125	80.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06177	A1RW38_THEPD_1_171	99.5

Sequence based PCA Plot of the family - PF06177 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=27 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay