3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06176

Details:

PFam ID : PF06176

PFam Domain Description : Lipopolysaccharide core biosynthesis protein (WaaY)

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 62

Average sequence length: 161.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06176	A4BYT1_9FLAO_162_304	95.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06176	C5UUT0_CLOBO_178_332	100

Sequence based PCA Plot of the family - PF06176 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=31 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay