3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06175

Details:

PFam ID : PF06175

PFam Domain Description : tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 362

Average sequence length: 125.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06175	A6FYJ0_9DELT_46_203	7.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06175	D2U3U4_9ENTR_1_96	100

Sequence based PCA Plot of the family - PF06175 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=150 Length=8
Motif2 Start=103 Length=11
Motif3 Start=16 Length=8
Motif4 Start=67 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay