3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06172

Details:

PFam ID : PF06172

PFam Domain Description : Cupin superfamily (DUF985)

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 418

Average sequence length: 135.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06172	C1AA92_GEMAT_31_120	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06172	Q5K7Y9_CRYNE_15_211	100

Sequence based PCA Plot of the family - PF06172 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=101 Length=8
Motif2 Start=147 Length=8
Motif3 Start=181 Length=8
Motif4 Start=12 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay