3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06165

Details:

PFam ID : PF06165

PFam Domain Description : Glycosyltransferase family 36

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 408

Average sequence length: 108.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06165	C6LE12_9FIRM_1_51	22.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06165	D2VHG4_NAEGR_1880_1991	100

Sequence based PCA Plot of the family - PF06165 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay