3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06154

Details:

PFam ID : PF06154

PFam Domain Description : YagB/YeeU/YfjZ family

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 58

Average sequence length: 93.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06154	D3V2J9_XENBS_18_95	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06154	D3V2J9_XENBS_18_95	94.7

Sequence based PCA Plot of the family - PF06154 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay