3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06151

Details:

PFam ID : PF06151

PFam Domain Description : Trehalose receptor

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 155

Average sequence length: 313.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06151	A4KCQ4_DROSE_8_159	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06151	B4KWJ0_DROMO_32_458	100

Sequence based PCA Plot of the family - PF06151 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=124 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay