3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06150

Details:

PFam ID : PF06150

PFam Domain Description : ChaB

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 169

Average sequence length: 57.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06150	B1XND5_SYNP2_211_268	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06150	Q9WC41_NPVLD_19_74	91.0

Sequence based PCA Plot of the family - PF06150 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=8 Length=17
Motif2 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay