3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06148

Details:

PFam ID : PF06148

PFam Domain Description : COG (conserved oligomeric Golgi) complex component, COG2

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 142

Average sequence length: 132.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06148	B6ADX4_CRYMR_13_140	70.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06148	E9CJE7_9EUKA_29_209	99.2

Sequence based PCA Plot of the family - PF06148 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay