3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06145

Details:

PFam ID : PF06145

PFam Domain Description : Coronavirus nonstructural protein NS1

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 7

Average sequence length: 23.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06145	E0F7M4_ACTPL_1_76	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06145	NS49_CVBOK_1_29	100

Sequence based PCA Plot of the family - PF06145 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay