3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06136

Details:

PFam ID : PF06136

PFam Domain Description : Domain of unknown function (DUF966)

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 75

Average sequence length: 303.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06136	C7IX83_ORYSJ_1_208	84.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06136	C0PN91_MAIZE_1_88	100

Sequence based PCA Plot of the family - PF06136 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=408 Length=11
Motif3 Start=14 Length=8
Motif4 Start=384 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay