3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06135

Details:

PFam ID : PF06135

PFam Domain Description : Bacterial protein of unknown function (DUF965)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 212

Average sequence length: 78.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06135	C5NYS5_9BACL_4_82	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06135	C5NYS5_9BACL_4_82	100

Sequence based PCA Plot of the family - PF06135 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=65 Length=8
Motif3 Start=31 Length=8
Motif4 Start=42 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay