3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06134

Details:

PFam ID : PF06134

PFam Domain Description : L-rhamnose isomerase (RhaA)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 135

Average sequence length: 377.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06134	F0Z3J3_9CLOT_5_428	42.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06134	F0Z3J3_9CLOT_5_428	98.5

Sequence based PCA Plot of the family - PF06134 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=65 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay