3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06125

Details:

PFam ID : PF06125

PFam Domain Description : Bacterial protein of unknown function (DUF961)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 72

Average sequence length: 98.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06125	E5XK53_9FIRM_3_77	64.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06125	Q8DW66_STRMU_9_126	100

Sequence based PCA Plot of the family - PF06125 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=29 Length=8
Motif3 Start=20 Length=8
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay