3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06123

Details:

PFam ID : PF06123

PFam Domain Description : Inner membrane protein CreD

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 150

Average sequence length: 401.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06123	C2FYW0_9SPHI_14_479	93.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06123	C2FYW0_9SPHI_14_479	100

Sequence based PCA Plot of the family - PF06123 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=1 Length=8
Motif3 Start=17 Length=8
Motif4 Start=79 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay