3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06122

Details:

PFam ID : PF06122

PFam Domain Description : Conjugative relaxosome accessory transposon protein

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 104

Average sequence length: 332.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06122	A0L355_SHESA_22_404	91.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06122	F2B8H7_9NEIS_17_428	100

Sequence based PCA Plot of the family - PF06122 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=53 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay