3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06116

Details:

PFam ID : PF06116

PFam Domain Description : Transcriptional activator RinB

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 24

Average sequence length: 48.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06116	E0VP60_PEDHC_94_246	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06116	Q5HMR8_STAEQ_1_51	100

Sequence based PCA Plot of the family - PF06116 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay