3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06114

Details:

PFam ID : PF06114

PFam Domain Description : Domain of unknown function (DUF955)

Number of Sequence in 50% Dataset : 774

Number of Sequence in Full Dataset : 2005

Average sequence length: 119.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06114	E0VP60_PEDHC_94_246	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06114	D6TN69_9CHLR_42_141	98.9

Sequence based PCA Plot of the family - PF06114 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=71 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay