3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06113

Details:

PFam ID : PF06113

PFam Domain Description : Brain and reproductive organ-expressed protein (BRE)

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 44

Average sequence length: 203.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06113	E0VP60_PEDHC_94_246	65.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06113	BRE_DANRE_4_336	100

Sequence based PCA Plot of the family - PF06113 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=45 Length=8
Motif3 Start=15 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay