3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06105

Details:

PFam ID : PF06105

PFam Domain Description : Aph-1 protein

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 83

Average sequence length: 206.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06105	Q585D0_9TRYP_2_192	54.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06105	E3MFH0_CAERE_2_267	100

Sequence based PCA Plot of the family - PF06105 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay