3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06103

Details:

PFam ID : PF06103

PFam Domain Description : Bacterial protein of unknown function (DUF948)

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 198

Average sequence length: 88.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06103	B1C972_9FIRM_10_96	26.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06103	A6CT98_9BACI_6_95	100

Sequence based PCA Plot of the family - PF06103 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=16 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay