3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06097

Details:

PFam ID : PF06097

PFam Domain Description : Bacterial protein of unknown function (DUF945)

Number of Sequence in 50% Dataset : 133

Number of Sequence in Full Dataset : 224

Average sequence length: 415.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06097	B1EQR8_9ESCH_3_290	86.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06097	D0YXJ0_LISDA_2_432	100

Sequence based PCA Plot of the family - PF06097 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=24 Length=8
Motif3 Start=54 Length=8
Motif4 Start=90 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay