3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06094

Details:

PFam ID : PF06094

PFam Domain Description : AIG2-like family

Number of Sequence in 50% Dataset : 264

Number of Sequence in Full Dataset : 780

Average sequence length: 105.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06094	A8XZH1_CAEBR_4_87	92.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06094	C5LBK3_9ALVE_50_150	99.6

Sequence based PCA Plot of the family - PF06094 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=78 Length=8
Motif4 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay